PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00392.1.g00050.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35357.6 Da    PI: 10.4771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00392.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.1e-21147196255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zpz_sc00392.1.g00050.1.am.mk 147 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 196
                                   59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.64E-30146206No hitNo description
Gene3DG3DSA:3.30.730.101.1E-32147206IPR001471AP2/ERF domain
SMARTSM003801.5E-35147210IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-23147206IPR016177DNA-binding domain
PROSITE profilePS5103223.354147204IPR001471AP2/ERF domain
PRINTSPR003673.0E-11148159IPR001471AP2/ERF domain
PfamPF008478.6E-15148196IPR001471AP2/ERF domain
PRINTSPR003673.0E-11170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFRVRSKTHR SPAVITPSGL VARTSVPRTK LPASRSWLRS AISKVITTPA CYKSAPAPRF  60
FPNPSPHQTI HQFPTRTPQS TTTERSEKPS SPNPFARPLT QLRPSEFLQF VEVNFSLRWS  120
LSSSPASGAG SGSTAAASAH PPRPQKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA  180
EEAALAYDQA AYRLRGDAAR LNFPDNAASR APLEPAVDAK LQTICATIAA ASSSSKGKGR  240
VGAVPINMAP QAQPMSPSRS SSDEGSGSGS SDDDEAASSA AAAVAAVAPL AEMGQLDFSE  300
VPWDEAESFV LRKYPSYEID WDALLGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-20146204463ATERF1
2gcc_A4e-20146204463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7423451e-106KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444319.17e-80hypothetical protein SORBIDRAFT_07g020090
SwissprotQ8H1E48e-52RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0A9FEZ53e-91A0A0A9FEZ5_ARUDO; Uncharacterized protein
STRINGSb07g020090.12e-79(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-34related to AP2 4